PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05087g03005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 297aa    MW: 31786.2 Da    PI: 8.6862
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05087g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.6e-3956114361
                    zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                               +++++cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++
  Niben101Scf05087g03005.1  56 SESIRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 114
                               57899***************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.3E-3258113IPR003851Zinc finger, Dof-type
ProDomPD0074789.0E-2459109IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.26459113IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106197IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MIQELFAGNT TLIGGGENIS KQFSTPSSSP LSSTSNSSTL TTNIPAAANA SSSSNSESIR  60
CPRCDSPNTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK NKNTNVTTTS  120
AAKSTAAKLK ASLPSFLGGI EHEISNSNPF LFSSPQNQYP LISILRGNHQ NLCFNADTCH  180
FPNSVADKEE GKSIGVNSYN QLPNSLGFCN NLWNNNQQNG SIIGEVQSSG LQDLYQRLKA  240
STSRCYPAHA PSPLGNAASS SSVILESAPV GAGAELGFWN PSISTWSDLQ TANGAYF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439189.10.0PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBLM1AMF61e-101M1AMF6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000259841e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-32DOF zinc finger protein 1